IDC User Guide
  • Welcome!
  • 🚀Getting started
  • Core functions
  • Frequently asked questions
  • Support
  • Key pointers
  • Publications
  • IDC team
  • Acknowledgments
  • Jobs
  • Data
    • Introduction
    • Data model
    • Data versioning
    • Organization of data
      • Files and metadata
      • Resolving CRDC Globally Unique Identifiers (GUIDs)
      • Clinical data
      • Organization of data, v2 through V13 (deprecated)
        • Files and metadata
        • Resolving CRDC Globally Unique Identifiers (GUIDs)
        • Clinical data
      • Organization of data in v1 (deprecated)
    • Downloading data
      • Downloading data with s5cmd
      • Directly loading DICOM objects from Google Cloud or AWS in Python
    • Data release notes
    • Data known issues
  • Tutorials
    • Portal tutorial
    • Python notebook tutorials
    • Slide microscopy
      • Using QuPath for visualization
  • DICOM
    • Introduction to DICOM
    • DICOM data model
    • Original objects
    • Derived objects
      • DICOM Segmentations
      • DICOM Radiotherapy Structure Sets
      • DICOM Structured Reports
    • Coding schemes
    • DICOM-TIFF dual personality files
    • IDC DICOM white papers
  • Portal
    • Getting started
    • Exploring and subsetting data
      • Configuring your search
      • Exploring search results
      • Data selection and download
    • Visualizing images
    • Proxy policy
    • Viewer release notes
    • Portal release notes
  • API
    • Getting Started
    • IDC API Concepts
    • Manifests
    • Accessing the API
    • Endpoint Details
    • V1 API
      • Getting Started
      • IDC Data Model Concepts
      • Accessing the API
      • Endpoint Details
      • Release Notes
  • Cookbook
    • Colab notebooks
    • BigQuery
    • Looker dashboards
      • Dashboard for your cohort
      • More dashboard examples
    • ACCESS allocations
    • Compute engine
      • 3D Slicer desktop VM
      • Using a BQ Manifest to Load DICOM Files onto a VM
      • Using VS Code with GCP VMs
      • Security considerations
    • NCI Cloud Resources
Powered by GitBook
On this page

Was this helpful?

Edit on GitHub
Export as PDF
  1. Portal

Exploring and subsetting data

PreviousGetting startedNextConfiguring your search

Last updated 2 months ago

Was this helpful?

Overview

Components on the left side of the page give you controls for configuring your selection:

Panels on the right side will automatically update based on what you select on the left side!

  • Selection configuration reflects the active search scope/filters in the Cohort Filters section. You can download all of the studies that match your filters. Below you will see the Cart section. Cart is helpful when selecting data by individual filters is too imprecise, and you want to have more granular control over your selection by selecting specific collections/patients/studies/series.

  • Filtering results section consists of the tables containing matching content that you can navigate following IDC Data model: first table shows the matching collections, selecting a collection will list matching cases (patients), selection of a case will populate the next table listing matching studies for the patient, and finally selecting a study will expand the final table with the list of series included in the study.

In the following sections of the documentation you will learn more about each of the items we just discussed.

Search scope allows you to limit your search to just the specific programs, collections and analysis results (as discussed in the documentation of the ).

Search configuration gives you access to a small set of metadata attributes to select DICOM studies (where "DICOM studies" fit into IDC data model is also discussed in the page) that contain data that meets the search criteria.

IDC Data model
IDC Data model