Endpoint Details
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This page provides details on each of the IDC API endpoints.
Get links to the IDC API Swagger UI and IDC documentation
curl -L \
--url '/about'{
"message": "text",
"documentation": "text",
"code": 1
}API Description and link to SwaggerUI interface.
Returns a list of IDC data versions and activation dates
curl -L \
--url '/versions'{
"idc_data_versions": [
{
"idc_data_version": "text",
"date_active": "text",
"active": "text"
}
],
"code": 1
}A list of IDC data versions and metadata
Returns a list of collections, and associated metadata, in the current IDC data version.
curl -L \
--url '/collections'{
"collections": [
{
"collection_id": "text",
"cancer_type": "text",
"date_updated": "text",
"description": "text",
"source_doi": "text",
"source_url": "text",
"image_types": "text",
"location": "text",
"species": "text",
"subject_count": 1,
"supporting_data": "text"
}
],
"code": 1
}A list of collections
Returns a list of the analysis results, and associated metadata, in the current IDC data version
curl -L \
--url '/analysis_results'{
"analysisResults": [
{
"analysis_result_id": "text",
"analysisArtifacts": "text",
"cancer_type": "text",
"collections": "text",
"date_updated": "text",
"description": "text",
"doi": "text",
"location": "text",
"subjects": 1,
"title": "text"
}
],
"code": 1
}A list of analysis results
Returns a list of 'filters', organized by data source (BQ table), for the current IDC data version. An IDC cohort is defined by a 'filterset', a set of (filter,[values]) pairs, and the IDC version against which the filterset is applied. The returned data is grouped by source (the BQ table that contains the corresponding filter values). For each filter, its data type and units, when available, are reported.
curl -L \
--url '/filters'{
"idc_data_version": "text",
"data_sources": [
{
"data_source": "text",
"filters": [
{
"name": "text",
"data_type": "CONTINUOUS_NUMERIC",
"units": "text"
}
]
}
],
"code": 1
}A list of filters
Return a list of the values accepted for a 'categorical filter'. A categorical filter is a filter having a data type of 'Categorical String' or 'Categorical Number'.
Categorical filter whose values are to be returned
curl -L \
--url '/filters/values/{filter}'{
"values": [
"text"
]
}A list of accepted values
Return a list of queryable manifest fields.
IDC data version whose data is to be returned. If the version is 'current', the fields of the current IDC version are returned.
curl -L \
--url '/fields/{version}'{
"idc_data_version": "text",
"data_sources": [
{
"data_source": "text",
"fields": [
"text"
]
}
],
"code": 1
}A list of fields
Returns a list of the user's cohorts and associated metadata. Authorization is required in order to access this endpoint.
curl -L \
--url '/cohorts'{
"cohorts": [
{
"cohort_id": 1,
"name": "text",
"description": "text",
"owner": "text",
"permission": "OWNER",
"filterSet": {
"idc_data_version": "text",
"filters": {
"project_short_name": [
"text"
],
"sample_type": [
"text"
],
"age_at_diagnosis_btw": [
1
],
"age_at_diagnosis_ebtw": [
1
],
"age_at_diagnosis_btwe": [
1
],
"age_at_diagnosis_ebtwe": [
1
],
"age_at_diagnosis_gte": [
1
],
"age_at_diagnosis_lte": [
1
],
"age_at_diagnosis_gt": [
1
],
"age_at_diagnosis_lt": [
1
],
"age_at_diagnosis_eq": [
1
],
"bmi_btw": [
1
],
"bmi_ebtw": [
1
],
"bmi_btwe": [
1
],
"bmi_ebtwe": [
1
],
"bmi_gte": [
1
],
"bmi_lte": [
1
],
"bmi_gt": [
1
],
"bmi_lt": [
1
],
"bmi_eq": [
1
],
"country": [
"text"
],
"disease_code": [
"text"
],
"ethnicity": [
"text"
],
"gender": [
"text"
],
"histological_type": [
"text"
],
"pathologic_stage": [
"text"
],
"project_name": [
"text"
],
"race": [
"text"
],
"tumor_tissue_site": [
"text"
],
"vital_status": [
"text"
],
"analysis_results_id": [
"text"
],
"AnatomicRegionSequence": [
"text"
],
"Apparent_Diffusion_Coefficient_btw": [
1
],
"Apparent_Diffusion_Coefficient_ebtw": [
1
],
"Apparent_Diffusion_Coefficient_btwe": [
1
],
"Apparent_Diffusion_Coefficient_ebtwe": [
1
],
"Apparent_Diffusion_Coefficient_gte": [
1
],
"Apparent_Diffusion_Coefficient_lte": [
1
],
"Apparent_Diffusion_Coefficient_gt": [
1
],
"Apparent_Diffusion_Coefficient_lt": [
1
],
"Apparent_Diffusion_Coefficient_eq": [
1
],
"BodyPartExamined": [
"text"
],
"Calcification": [
"text"
],
"CancerType": [
"text"
],
"collection_id": [
"text"
],
"Diameter_btw": [
1
],
"Diameter_ebtw": [
1
],
"Diameter_btwe": [
1
],
"Diameter_ebtwe": [
1
],
"Diameter_gte": [
1
],
"Diameter_lte": [
1
],
"Diameter_gt": [
1
],
"Diameter_lt": [
1
],
"Diameter_eq": [
1
],
"illuminationType": [
"text"
],
"Internal_structure": [
"text"
],
"license_short_name": [
"text"
],
"Lobular_Pattern": [
"text"
],
"Malignancy": [
"text"
],
"Manufacturer": [
"text"
],
"ManufacturerModelName": [
"text"
],
"Margin": [
"text"
],
"max_TotalPixelMatrixColumns_btw": [
1
],
"max_TotalPixelMatrixColumns_ebtw": [
1
],
"max_TotalPixelMatrixColumns_btwe": [
1
],
"max_TotalPixelMatrixColumns_ebtwe": [
1
],
"max_TotalPixelMatrixColumns_gte": [
1
],
"max_TotalPixelMatrixColumns_lte": [
1
],
"max_TotalPixelMatrixColumns_gt": [
1
],
"max_TotalPixelMatrixColumns_lt": [
1
],
"max_TotalPixelMatrixColumns_eq": [
1
],
"max_TotalPixelMatrixRows_btw": [
1
],
"max_TotalPixelMatrixRows_ebtw": [
1
],
"max_TotalPixelMatrixRows_btwe": [
1
],
"max_TotalPixelMatrixRows_ebtwe": [
1
],
"max_TotalPixelMatrixRows_gte": [
1
],
"max_TotalPixelMatrixRows_lte": [
1
],
"max_TotalPixelMatrixRows_gt": [
1
],
"max_TotalPixelMatrixRows_lt": [
1
],
"max_TotalPixelMatrixRows_eq": [
1
],
"min_PixelSpacing_btw": [
1
],
"min_PixelSpacing_ebtw": [
1
],
"min_PixelSpacing_btwe": [
1
],
"min_PixelSpacing_ebtwe": [
1
],
"min_PixelSpacing_gte": [
1
],
"min_PixelSpacing_lte": [
1
],
"min_PixelSpacing_gt": [
1
],
"min_PixelSpacing_lt": [
1
],
"min_PixelSpacing_eq": [
1
],
"Modality": [
"text"
],
"ObjectiveLensPower": [
1
],
"PatientID": [
"text"
],
"primaryAnatomicStructure": [
"text"
],
"SamplesPerPixel": [
"text"
],
"SegmentAlgorithmName": [
"text"
],
"SegmentAlgorithmType": [
"text"
],
"SegmentedPropertyCategoryCodeSequence": [
"text"
],
"SegmentedPropertyTypeCodeSequence": [
"text"
],
"SeriesDescription": [
"text"
],
"SeriesInstanceUID": [
"text"
],
"SeriesNumber": [
"text"
],
"SliceThickness_btw": [
1
],
"SliceThickness_ebtw": [
1
],
"SliceThickness_btwe": [
1
],
"SliceThickness_ebtwe": [
1
],
"SliceThickness_gte": [
1
],
"SliceThickness_lte": [
1
],
"SliceThickness_gt": [
1
],
"SliceThickness_lt": [
1
],
"SliceThickness_eq": [
1
],
"SOPClassUID": [
"text"
],
"SOPInstanceUID": [
"text"
],
"Sphericity": [
"text"
],
"Sphericity_quant_btw": [
1
],
"Sphericity_quant_ebtw": [
1
],
"Sphericity_quant_btwe": [
1
],
"Sphericity_quant_ebtwe": [
1
],
"Sphericity_quant_gte": [
1
],
"Sphericity_quant_lte": [
1
],
"Sphericity_quant_gt": [
1
],
"Sphericity_quant_lt": [
1
],
"Sphericity_quant_eq": [
1
],
"Spiculation": [
"text"
],
"StudyDate": [
"text"
],
"StudyDescription": [
"text"
],
"StudyInstanceUID": [
"text"
],
"Subtlety_score": [
"text"
],
"Surface_area_of_mesh_btw": [
1
],
"Surface_area_of_mesh_ebtw": [
1
],
"Surface_area_of_mesh_btwe": [
1
],
"Surface_area_of_mesh_ebtwe": [
1
],
"Surface_area_of_mesh_gte": [
1
],
"Surface_area_of_mesh_lte": [
1
],
"Surface_area_of_mesh_gt": [
1
],
"Surface_area_of_mesh_lt": [
1
],
"Surface_area_of_mesh_eq": [
1
],
"tcia_species": [
"text"
],
"tcia_tumorLocation": [
"text"
],
"Texture": [
"text"
],
"Volume_btw": [
1
],
"Volume_ebtw": [
1
],
"Volume_btwe": [
1
],
"Volume_ebtwe": [
1
],
"Volume_gte": [
1
],
"Volume_lte": [
1
],
"Volume_gt": [
1
],
"Volume_lt": [
1
],
"Volume_eq": [
1
],
"Volume_of_Mesh_btw": [
1
],
"Volume_of_Mesh_ebtw": [
1
],
"Volume_of_Mesh_btwe": [
1
],
"Volume_of_Mesh_ebtwe": [
1
],
"Volume_of_Mesh_gte": [
1
],
"Volume_of_Mesh_lte": [
1
],
"Volume_of_Mesh_gt": [
1
],
"Volume_of_Mesh_lt": [
1
],
"Volume_of_Mesh_eq": [
1
]
}
}
}
]
}A list of the user's cohorts.
Delete a specified cohort. Authorization is required in order to access this endpoint.
ID of cohort to be deleted.
curl -L \
--request DELETE \
--url '/cohorts/{cohort_id}'{
"cohorts": [
{
"cohort_id": 1,
"result": "text"
}
]
}A list of the user's remaining cohorts.
Returns the next page of a /cohorts/manifest/preview request, when additional data is available.
The next_page token returned by a previous access of the /cohorts/manifest/preview endpoint. The token identifies the next page to be retrieved
The maximum number of rows to be returned. If the manifest contains additional rows, another 'next_page' token is returned.
curl -L \
--url '/cohorts/manifest/preview/nextPage'{
"manifest": {
"manifest_data": [
{
"age_at_diagnosis": 1,
"analysis_results_id": "text",
"AnatomicRegionSequence": "text",
"Apparent_Diffusion_Coefficient": 1,
"aws_bucket": "text",
"aws_url": "text",
"bmi": 1,
"BodyPartExamined": "text",
"Calcification": "text",
"CancerType": "text",
"collection_id": "text",
"country": "text",
"crdc_instance_uuid": "text",
"crdc_series_uuid": "text",
"crdc_study_uuid": "text",
"Diameter": 1,
"disease_code": "text",
"ethnicity": "text",
"FrameOfReferenceUID": "text",
"gcs_bucket": "text",
"gcs_url": "text",
"gender": "text",
"histological_type": "text",
"illuminationType": "text",
"instance_size": 1,
"Internal_structure": "text",
"license_short_name": "text",
"Lobular_Pattern": "text",
"Malignancy": "text",
"Manufacturer": "text",
"ManufacturerModelName": "text",
"Margin": "text",
"max_TotalPixelMatrixColumns": 1,
"max_TotalPixelMatrixRows": 1,
"min_PixelSpacing": 1,
"Modality": "text",
"ObjectiveLensPower": 1,
"pathologic_stage": "text",
"PatientID": "text",
"primaryAnatomicStructure": "text",
"Program": "text",
"project_name": "text",
"project_short_name": "text",
"race": "text",
"sample_type": "text",
"SamplesPerPixel": 1,
"SegmentAlgorithmType": "text",
"SegmentedPropertyCategoryCodeSequence": "text",
"SegmentedPropertyTypeCodeSequence": "text",
"SegmentNumber": 1,
"SeriesDescription": "text",
"SeriesInstanceUID": "text",
"SeriesNumber": "text",
"SliceThickness": 1,
"SOPClassUID": "text",
"SOPInstanceUID": "text",
"source_DOI": "text",
"Sphericity": "text",
"Sphericity_quant": 1,
"Spiculation": "text",
"StudyDate": "text",
"StudyDescription": "text",
"StudyInstanceUID": "text",
"Subtlety_score": "text",
"Surface_area_of_mesh": 1,
"tcia_species": "text",
"tcia_tumorLocation": "text",
"Texture": "text",
"tumor_tissue_site": "text",
"vital_status": "text",
"Volume": 1,
"Volume_of_Mesh": 1,
"instance_count": 1,
"series_count": 1,
"study_count": 1,
"patient_count": 1,
"collection_count": 1,
"group_size": 1
}
],
"totalFound": 1,
"rowsReturned": 1
},
"next_page": "text",
"code": 1
}Preview manifest page
Returns the next page of a /cohorts/manifest request, when additional data is available. Authorization is required in order to access this endpoint.
The next_page token returned by a previous access of the /cohorts/manifest endpoint. The token identifies the next page to be retrieved
The maximum number of rows to be returned. If the manifest contains additional rows, another 'next_page' token is returned.
curl -L \
--url '/cohorts/manifest/nextPage'{
"manifest": {
"manifest_data": [
{
"age_at_diagnosis": 1,
"analysis_results_id": "text",
"AnatomicRegionSequence": "text",
"Apparent_Diffusion_Coefficient": 1,
"aws_bucket": "text",
"aws_url": "text",
"bmi": 1,
"BodyPartExamined": "text",
"Calcification": "text",
"CancerType": "text",
"collection_id": "text",
"country": "text",
"crdc_instance_uuid": "text",
"crdc_series_uuid": "text",
"crdc_study_uuid": "text",
"Diameter": 1,
"disease_code": "text",
"ethnicity": "text",
"FrameOfReferenceUID": "text",
"gcs_bucket": "text",
"gcs_url": "text",
"gender": "text",
"histological_type": "text",
"illuminationType": "text",
"instance_size": 1,
"Internal_structure": "text",
"license_short_name": "text",
"Lobular_Pattern": "text",
"Malignancy": "text",
"Manufacturer": "text",
"ManufacturerModelName": "text",
"Margin": "text",
"max_TotalPixelMatrixColumns": 1,
"max_TotalPixelMatrixRows": 1,
"min_PixelSpacing": 1,
"Modality": "text",
"ObjectiveLensPower": 1,
"pathologic_stage": "text",
"PatientID": "text",
"primaryAnatomicStructure": "text",
"Program": "text",
"project_name": "text",
"project_short_name": "text",
"race": "text",
"sample_type": "text",
"SamplesPerPixel": 1,
"SegmentAlgorithmType": "text",
"SegmentedPropertyCategoryCodeSequence": "text",
"SegmentedPropertyTypeCodeSequence": "text",
"SegmentNumber": 1,
"SeriesDescription": "text",
"SeriesInstanceUID": "text",
"SeriesNumber": "text",
"SliceThickness": 1,
"SOPClassUID": "text",
"SOPInstanceUID": "text",
"source_DOI": "text",
"Sphericity": "text",
"Sphericity_quant": 1,
"Spiculation": "text",
"StudyDate": "text",
"StudyDescription": "text",
"StudyInstanceUID": "text",
"Subtlety_score": "text",
"Surface_area_of_mesh": 1,
"tcia_species": "text",
"tcia_tumorLocation": "text",
"Texture": "text",
"tumor_tissue_site": "text",
"vital_status": "text",
"Volume": 1,
"Volume_of_Mesh": 1,
"instance_count": 1,
"series_count": 1,
"study_count": 1,
"patient_count": 1,
"collection_count": 1,
"group_size": 1
}
],
"totalFound": 1,
"rowsReturned": 1
},
"next_page": "text",
"code": 1
}manifest page
Retrieve user's account information. Authorization is required in order to access this endpoint.
curl -L \
--url '/users/account_details'{
"account_details": {
"date_joined": "text",
"email": "text",
"id": "text",
"last_login": "text",
"username": "text",
"extra_data": {
"id'": "text",
"email": "text",
"verified_email": "text",
"name'": "text",
"given_name": "text",
"family_name": "text",
"picture": "text",
"locale": "text",
"hd": "text"
},
"first_name": "text",
"last_name": "text"
},
"code": 1
}Current account information for the validated user.
Create a cohort as defined by a specified 'filterset' and IDC version. Authorization is required in order to access this endpoint.
curl -L \
--request POST \
--url '/cohorts' \
--header 'Content-Type: application/json' \
--data '{
"name": "mycohort",
"description": "Example description",
"filters": {
"collection_id": [
"tcga_luad",
"tcga_kirc"
],
"Modality": [
"CT",
"MR"
],
"race": [
"WHITE"
],
"age_at_diagnosis_btw": [
65,
75
]
}
}'{
"cohort_properties": {
"cohort_id": "text",
"name": "text",
"description": "text",
"filter": {
"idc_data_version": "text",
"filters": {
"project_short_name": [
"text"
],
"sample_type": [
"text"
],
"age_at_diagnosis_btw": [
1
],
"age_at_diagnosis_ebtw": [
1
],
"age_at_diagnosis_btwe": [
1
],
"age_at_diagnosis_ebtwe": [
1
],
"age_at_diagnosis_gte": [
1
],
"age_at_diagnosis_lte": [
1
],
"age_at_diagnosis_gt": [
1
],
"age_at_diagnosis_lt": [
1
],
"age_at_diagnosis_eq": [
1
],
"bmi_btw": [
1
],
"bmi_ebtw": [
1
],
"bmi_btwe": [
1
],
"bmi_ebtwe": [
1
],
"bmi_gte": [
1
],
"bmi_lte": [
1
],
"bmi_gt": [
1
],
"bmi_lt": [
1
],
"bmi_eq": [
1
],
"country": [
"text"
],
"disease_code": [
"text"
],
"ethnicity": [
"text"
],
"gender": [
"text"
],
"histological_type": [
"text"
],
"pathologic_stage": [
"text"
],
"project_name": [
"text"
],
"race": [
"text"
],
"tumor_tissue_site": [
"text"
],
"vital_status": [
"text"
],
"analysis_results_id": [
"text"
],
"AnatomicRegionSequence": [
"text"
],
"Apparent_Diffusion_Coefficient_btw": [
1
],
"Apparent_Diffusion_Coefficient_ebtw": [
1
],
"Apparent_Diffusion_Coefficient_btwe": [
1
],
"Apparent_Diffusion_Coefficient_ebtwe": [
1
],
"Apparent_Diffusion_Coefficient_gte": [
1
],
"Apparent_Diffusion_Coefficient_lte": [
1
],
"Apparent_Diffusion_Coefficient_gt": [
1
],
"Apparent_Diffusion_Coefficient_lt": [
1
],
"Apparent_Diffusion_Coefficient_eq": [
1
],
"BodyPartExamined": [
"text"
],
"Calcification": [
"text"
],
"CancerType": [
"text"
],
"collection_id": [
"text"
],
"Diameter_btw": [
1
],
"Diameter_ebtw": [
1
],
"Diameter_btwe": [
1
],
"Diameter_ebtwe": [
1
],
"Diameter_gte": [
1
],
"Diameter_lte": [
1
],
"Diameter_gt": [
1
],
"Diameter_lt": [
1
],
"Diameter_eq": [
1
],
"illuminationType": [
"text"
],
"Internal_structure": [
"text"
],
"license_short_name": [
"text"
],
"Lobular_Pattern": [
"text"
],
"Malignancy": [
"text"
],
"Manufacturer": [
"text"
],
"ManufacturerModelName": [
"text"
],
"Margin": [
"text"
],
"max_TotalPixelMatrixColumns_btw": [
1
],
"max_TotalPixelMatrixColumns_ebtw": [
1
],
"max_TotalPixelMatrixColumns_btwe": [
1
],
"max_TotalPixelMatrixColumns_ebtwe": [
1
],
"max_TotalPixelMatrixColumns_gte": [
1
],
"max_TotalPixelMatrixColumns_lte": [
1
],
"max_TotalPixelMatrixColumns_gt": [
1
],
"max_TotalPixelMatrixColumns_lt": [
1
],
"max_TotalPixelMatrixColumns_eq": [
1
],
"max_TotalPixelMatrixRows_btw": [
1
],
"max_TotalPixelMatrixRows_ebtw": [
1
],
"max_TotalPixelMatrixRows_btwe": [
1
],
"max_TotalPixelMatrixRows_ebtwe": [
1
],
"max_TotalPixelMatrixRows_gte": [
1
],
"max_TotalPixelMatrixRows_lte": [
1
],
"max_TotalPixelMatrixRows_gt": [
1
],
"max_TotalPixelMatrixRows_lt": [
1
],
"max_TotalPixelMatrixRows_eq": [
1
],
"min_PixelSpacing_btw": [
1
],
"min_PixelSpacing_ebtw": [
1
],
"min_PixelSpacing_btwe": [
1
],
"min_PixelSpacing_ebtwe": [
1
],
"min_PixelSpacing_gte": [
1
],
"min_PixelSpacing_lte": [
1
],
"min_PixelSpacing_gt": [
1
],
"min_PixelSpacing_lt": [
1
],
"min_PixelSpacing_eq": [
1
],
"Modality": [
"text"
],
"ObjectiveLensPower": [
1
],
"PatientID": [
"text"
],
"primaryAnatomicStructure": [
"text"
],
"SamplesPerPixel": [
"text"
],
"SegmentAlgorithmName": [
"text"
],
"SegmentAlgorithmType": [
"text"
],
"SegmentedPropertyCategoryCodeSequence": [
"text"
],
"SegmentedPropertyTypeCodeSequence": [
"text"
],
"SeriesDescription": [
"text"
],
"SeriesInstanceUID": [
"text"
],
"SeriesNumber": [
"text"
],
"SliceThickness_btw": [
1
],
"SliceThickness_ebtw": [
1
],
"SliceThickness_btwe": [
1
],
"SliceThickness_ebtwe": [
1
],
"SliceThickness_gte": [
1
],
"SliceThickness_lte": [
1
],
"SliceThickness_gt": [
1
],
"SliceThickness_lt": [
1
],
"SliceThickness_eq": [
1
],
"SOPClassUID": [
"text"
],
"SOPInstanceUID": [
"text"
],
"Sphericity": [
"text"
],
"Sphericity_quant_btw": [
1
],
"Sphericity_quant_ebtw": [
1
],
"Sphericity_quant_btwe": [
1
],
"Sphericity_quant_ebtwe": [
1
],
"Sphericity_quant_gte": [
1
],
"Sphericity_quant_lte": [
1
],
"Sphericity_quant_gt": [
1
],
"Sphericity_quant_lt": [
1
],
"Sphericity_quant_eq": [
1
],
"Spiculation": [
"text"
],
"StudyDate": [
"text"
],
"StudyDescription": [
"text"
],
"StudyInstanceUID": [
"text"
],
"Subtlety_score": [
"text"
],
"Surface_area_of_mesh_btw": [
1
],
"Surface_area_of_mesh_ebtw": [
1
],
"Surface_area_of_mesh_btwe": [
1
],
"Surface_area_of_mesh_ebtwe": [
1
],
"Surface_area_of_mesh_gte": [
1
],
"Surface_area_of_mesh_lte": [
1
],
"Surface_area_of_mesh_gt": [
1
],
"Surface_area_of_mesh_lt": [
1
],
"Surface_area_of_mesh_eq": [
1
],
"tcia_species": [
"text"
],
"tcia_tumorLocation": [
"text"
],
"Texture": [
"text"
],
"Volume_btw": [
1
],
"Volume_ebtw": [
1
],
"Volume_btwe": [
1
],
"Volume_ebtwe": [
1
],
"Volume_gte": [
1
],
"Volume_lte": [
1
],
"Volume_gt": [
1
],
"Volume_lt": [
1
],
"Volume_eq": [
1
],
"Volume_of_Mesh_btw": [
1
],
"Volume_of_Mesh_ebtw": [
1
],
"Volume_of_Mesh_btwe": [
1
],
"Volume_of_Mesh_ebtwe": [
1
],
"Volume_of_Mesh_gte": [
1
],
"Volume_of_Mesh_lte": [
1
],
"Volume_of_Mesh_gt": [
1
],
"Volume_of_Mesh_lt": [
1
],
"Volume_of_Mesh_eq": [
1
]
}
}
},
"code": 1
}Summary information about the cohort created.
Delete a list of the user's cohorts. Authorization is required in order to access this endpoint.
curl -L \
--request DELETE \
--url '/cohorts' \
--header 'Content-Type: application/json' \
--data '{
"cohorts": [
1
]
}'{
"cohorts": [
{
"cohort_id": 1,
"result": "text"
}
]
}Summary of cohort deletion.
Returns a manifest of a 'previewed cohort' as defined by a specified filterset. The filterset is always applied to the current IDC version. The metadata to be returned in the manifest is configurable. A previewed cohort is not saved in the user's IDC account.
{"name":"mycohort","description":"Example description","filters":{"collection_id":["tcga_luad","tcga_kirc"],"Modality":["CT","MR"],"race":["WHITE"],"age_at_diagnosis_btw":[65,75]}}If True, return counts of DICOM objects
If True, return size in bytes of instances in group
If True, return the BQ SQL for this query.
Maximum number of rows to return
curl -L \
--request POST \
--url '/cohorts/manifest/preview' \
--header 'Content-Type: application/json' \
--data '{
"cohort_def": {
"name": "mycohort",
"description": "Example description",
"filters": {
"collection_id": [
"TCGA_luad",
"tcga_kirc"
],
"Modality": [
"CT",
"MR"
],
"Race": [
"WHITE"
],
"age_at_diagnosis_btw": [
65,
75
]
}
},
"fields": [
"Age_At_Diagnosis",
"aws_bucket",
"crdc_series_uuid",
"Modality",
"SliceThickness"
],
"counts": true,
"group_size": true,
"sql": true,
"page_size": 1000
}'{
"cohort": {
"name": "text",
"description": "text",
"filterSet": {
"idc_data_version": "text",
"filters": {
"project_short_name": [
"text"
],
"sample_type": [
"text"
],
"age_at_diagnosis_btw": [
1
],
"age_at_diagnosis_ebtw": [
1
],
"age_at_diagnosis_btwe": [
1
],
"age_at_diagnosis_ebtwe": [
1
],
"age_at_diagnosis_gte": [
1
],
"age_at_diagnosis_lte": [
1
],
"age_at_diagnosis_gt": [
1
],
"age_at_diagnosis_lt": [
1
],
"age_at_diagnosis_eq": [
1
],
"bmi_btw": [
1
],
"bmi_ebtw": [
1
],
"bmi_btwe": [
1
],
"bmi_ebtwe": [
1
],
"bmi_gte": [
1
],
"bmi_lte": [
1
],
"bmi_gt": [
1
],
"bmi_lt": [
1
],
"bmi_eq": [
1
],
"country": [
"text"
],
"disease_code": [
"text"
],
"ethnicity": [
"text"
],
"gender": [
"text"
],
"histological_type": [
"text"
],
"pathologic_stage": [
"text"
],
"project_name": [
"text"
],
"race": [
"text"
],
"tumor_tissue_site": [
"text"
],
"vital_status": [
"text"
],
"analysis_results_id": [
"text"
],
"AnatomicRegionSequence": [
"text"
],
"Apparent_Diffusion_Coefficient_btw": [
1
],
"Apparent_Diffusion_Coefficient_ebtw": [
1
],
"Apparent_Diffusion_Coefficient_btwe": [
1
],
"Apparent_Diffusion_Coefficient_ebtwe": [
1
],
"Apparent_Diffusion_Coefficient_gte": [
1
],
"Apparent_Diffusion_Coefficient_lte": [
1
],
"Apparent_Diffusion_Coefficient_gt": [
1
],
"Apparent_Diffusion_Coefficient_lt": [
1
],
"Apparent_Diffusion_Coefficient_eq": [
1
],
"BodyPartExamined": [
"text"
],
"Calcification": [
"text"
],
"CancerType": [
"text"
],
"collection_id": [
"text"
],
"Diameter_btw": [
1
],
"Diameter_ebtw": [
1
],
"Diameter_btwe": [
1
],
"Diameter_ebtwe": [
1
],
"Diameter_gte": [
1
],
"Diameter_lte": [
1
],
"Diameter_gt": [
1
],
"Diameter_lt": [
1
],
"Diameter_eq": [
1
],
"illuminationType": [
"text"
],
"Internal_structure": [
"text"
],
"license_short_name": [
"text"
],
"Lobular_Pattern": [
"text"
],
"Malignancy": [
"text"
],
"Manufacturer": [
"text"
],
"ManufacturerModelName": [
"text"
],
"Margin": [
"text"
],
"max_TotalPixelMatrixColumns_btw": [
1
],
"max_TotalPixelMatrixColumns_ebtw": [
1
],
"max_TotalPixelMatrixColumns_btwe": [
1
],
"max_TotalPixelMatrixColumns_ebtwe": [
1
],
"max_TotalPixelMatrixColumns_gte": [
1
],
"max_TotalPixelMatrixColumns_lte": [
1
],
"max_TotalPixelMatrixColumns_gt": [
1
],
"max_TotalPixelMatrixColumns_lt": [
1
],
"max_TotalPixelMatrixColumns_eq": [
1
],
"max_TotalPixelMatrixRows_btw": [
1
],
"max_TotalPixelMatrixRows_ebtw": [
1
],
"max_TotalPixelMatrixRows_btwe": [
1
],
"max_TotalPixelMatrixRows_ebtwe": [
1
],
"max_TotalPixelMatrixRows_gte": [
1
],
"max_TotalPixelMatrixRows_lte": [
1
],
"max_TotalPixelMatrixRows_gt": [
1
],
"max_TotalPixelMatrixRows_lt": [
1
],
"max_TotalPixelMatrixRows_eq": [
1
],
"min_PixelSpacing_btw": [
1
],
"min_PixelSpacing_ebtw": [
1
],
"min_PixelSpacing_btwe": [
1
],
"min_PixelSpacing_ebtwe": [
1
],
"min_PixelSpacing_gte": [
1
],
"min_PixelSpacing_lte": [
1
],
"min_PixelSpacing_gt": [
1
],
"min_PixelSpacing_lt": [
1
],
"min_PixelSpacing_eq": [
1
],
"Modality": [
"text"
],
"ObjectiveLensPower": [
1
],
"PatientID": [
"text"
],
"primaryAnatomicStructure": [
"text"
],
"SamplesPerPixel": [
"text"
],
"SegmentAlgorithmName": [
"text"
],
"SegmentAlgorithmType": [
"text"
],
"SegmentedPropertyCategoryCodeSequence": [
"text"
],
"SegmentedPropertyTypeCodeSequence": [
"text"
],
"SeriesDescription": [
"text"
],
"SeriesInstanceUID": [
"text"
],
"SeriesNumber": [
"text"
],
"SliceThickness_btw": [
1
],
"SliceThickness_ebtw": [
1
],
"SliceThickness_btwe": [
1
],
"SliceThickness_ebtwe": [
1
],
"SliceThickness_gte": [
1
],
"SliceThickness_lte": [
1
],
"SliceThickness_gt": [
1
],
"SliceThickness_lt": [
1
],
"SliceThickness_eq": [
1
],
"SOPClassUID": [
"text"
],
"SOPInstanceUID": [
"text"
],
"Sphericity": [
"text"
],
"Sphericity_quant_btw": [
1
],
"Sphericity_quant_ebtw": [
1
],
"Sphericity_quant_btwe": [
1
],
"Sphericity_quant_ebtwe": [
1
],
"Sphericity_quant_gte": [
1
],
"Sphericity_quant_lte": [
1
],
"Sphericity_quant_gt": [
1
],
"Sphericity_quant_lt": [
1
],
"Sphericity_quant_eq": [
1
],
"Spiculation": [
"text"
],
"StudyDate": [
"text"
],
"StudyDescription": [
"text"
],
"StudyInstanceUID": [
"text"
],
"Subtlety_score": [
"text"
],
"Surface_area_of_mesh_btw": [
1
],
"Surface_area_of_mesh_ebtw": [
1
],
"Surface_area_of_mesh_btwe": [
1
],
"Surface_area_of_mesh_ebtwe": [
1
],
"Surface_area_of_mesh_gte": [
1
],
"Surface_area_of_mesh_lte": [
1
],
"Surface_area_of_mesh_gt": [
1
],
"Surface_area_of_mesh_lt": [
1
],
"Surface_area_of_mesh_eq": [
1
],
"tcia_species": [
"text"
],
"tcia_tumorLocation": [
"text"
],
"Texture": [
"text"
],
"Volume_btw": [
1
],
"Volume_ebtw": [
1
],
"Volume_btwe": [
1
],
"Volume_ebtwe": [
1
],
"Volume_gte": [
1
],
"Volume_lte": [
1
],
"Volume_gt": [
1
],
"Volume_lt": [
1
],
"Volume_eq": [
1
],
"Volume_of_Mesh_btw": [
1
],
"Volume_of_Mesh_ebtw": [
1
],
"Volume_of_Mesh_btwe": [
1
],
"Volume_of_Mesh_ebtwe": [
1
],
"Volume_of_Mesh_gte": [
1
],
"Volume_of_Mesh_lte": [
1
],
"Volume_of_Mesh_gt": [
1
],
"Volume_of_Mesh_lt": [
1
],
"Volume_of_Mesh_eq": [
1
]
}
},
"sql": "text"
},
"manifest": {
"manifest_data": [
{
"age_at_diagnosis": 1,
"analysis_results_id": "text",
"AnatomicRegionSequence": "text",
"Apparent_Diffusion_Coefficient": 1,
"aws_bucket": "text",
"aws_url": "text",
"bmi": 1,
"BodyPartExamined": "text",
"Calcification": "text",
"CancerType": "text",
"collection_id": "text",
"country": "text",
"crdc_instance_uuid": "text",
"crdc_series_uuid": "text",
"crdc_study_uuid": "text",
"Diameter": 1,
"disease_code": "text",
"ethnicity": "text",
"FrameOfReferenceUID": "text",
"gcs_bucket": "text",
"gcs_url": "text",
"gender": "text",
"histological_type": "text",
"illuminationType": "text",
"instance_size": 1,
"Internal_structure": "text",
"license_short_name": "text",
"Lobular_Pattern": "text",
"Malignancy": "text",
"Manufacturer": "text",
"ManufacturerModelName": "text",
"Margin": "text",
"max_TotalPixelMatrixColumns": 1,
"max_TotalPixelMatrixRows": 1,
"min_PixelSpacing": 1,
"Modality": "text",
"ObjectiveLensPower": 1,
"pathologic_stage": "text",
"PatientID": "text",
"primaryAnatomicStructure": "text",
"Program": "text",
"project_name": "text",
"project_short_name": "text",
"race": "text",
"sample_type": "text",
"SamplesPerPixel": 1,
"SegmentAlgorithmType": "text",
"SegmentedPropertyCategoryCodeSequence": "text",
"SegmentedPropertyTypeCodeSequence": "text",
"SegmentNumber": 1,
"SeriesDescription": "text",
"SeriesInstanceUID": "text",
"SeriesNumber": "text",
"SliceThickness": 1,
"SOPClassUID": "text",
"SOPInstanceUID": "text",
"source_DOI": "text",
"Sphericity": "text",
"Sphericity_quant": 1,
"Spiculation": "text",
"StudyDate": "text",
"StudyDescription": "text",
"StudyInstanceUID": "text",
"Subtlety_score": "text",
"Surface_area_of_mesh": 1,
"tcia_species": "text",
"tcia_tumorLocation": "text",
"Texture": "text",
"tumor_tissue_site": "text",
"vital_status": "text",
"Volume": 1,
"Volume_of_Mesh": 1,
"instance_count": 1,
"series_count": 1,
"study_count": 1,
"patient_count": 1,
"collection_count": 1,
"group_size": 1
}
],
"totalFound": 1,
"rowsReturned": 1
},
"next_page": "text",
"code": 1
}Preview cohort spec and manifest
Returns a manifest of a cohort that was previously saved under the user's IDC account. The metadata to be returned in the manifest is configurable. Authorization is required in order to access this endpoint.
IDC Cohort ID
If True, return counts of DICOM objects
If True, return size in bytes of instances in group
If True, return the BQ SQL for this query.
Maximum number of rows to return
curl -L \
--request POST \
--url '/cohorts/manifest/{cohort_id}' \
--header 'Content-Type: application/json' \
--data '{
"fields": [
"Age_At_Diagnosis",
"aws_bucket",
"crdc_series_uuid",
"Modality",
"SliceThickness"
],
"counts": true,
"group_size": true,
"sql": true,
"page_size": 1000
}'{
"cohort": {
"cohort_id": 1,
"name": "text",
"description": "text",
"user_email": "text",
"filterSet": {
"idc_data_version": "text",
"filters": {
"project_short_name": [
"text"
],
"sample_type": [
"text"
],
"age_at_diagnosis_btw": [
1
],
"age_at_diagnosis_ebtw": [
1
],
"age_at_diagnosis_btwe": [
1
],
"age_at_diagnosis_ebtwe": [
1
],
"age_at_diagnosis_gte": [
1
],
"age_at_diagnosis_lte": [
1
],
"age_at_diagnosis_gt": [
1
],
"age_at_diagnosis_lt": [
1
],
"age_at_diagnosis_eq": [
1
],
"bmi_btw": [
1
],
"bmi_ebtw": [
1
],
"bmi_btwe": [
1
],
"bmi_ebtwe": [
1
],
"bmi_gte": [
1
],
"bmi_lte": [
1
],
"bmi_gt": [
1
],
"bmi_lt": [
1
],
"bmi_eq": [
1
],
"country": [
"text"
],
"disease_code": [
"text"
],
"ethnicity": [
"text"
],
"gender": [
"text"
],
"histological_type": [
"text"
],
"pathologic_stage": [
"text"
],
"project_name": [
"text"
],
"race": [
"text"
],
"tumor_tissue_site": [
"text"
],
"vital_status": [
"text"
],
"analysis_results_id": [
"text"
],
"AnatomicRegionSequence": [
"text"
],
"Apparent_Diffusion_Coefficient_btw": [
1
],
"Apparent_Diffusion_Coefficient_ebtw": [
1
],
"Apparent_Diffusion_Coefficient_btwe": [
1
],
"Apparent_Diffusion_Coefficient_ebtwe": [
1
],
"Apparent_Diffusion_Coefficient_gte": [
1
],
"Apparent_Diffusion_Coefficient_lte": [
1
],
"Apparent_Diffusion_Coefficient_gt": [
1
],
"Apparent_Diffusion_Coefficient_lt": [
1
],
"Apparent_Diffusion_Coefficient_eq": [
1
],
"BodyPartExamined": [
"text"
],
"Calcification": [
"text"
],
"CancerType": [
"text"
],
"collection_id": [
"text"
],
"Diameter_btw": [
1
],
"Diameter_ebtw": [
1
],
"Diameter_btwe": [
1
],
"Diameter_ebtwe": [
1
],
"Diameter_gte": [
1
],
"Diameter_lte": [
1
],
"Diameter_gt": [
1
],
"Diameter_lt": [
1
],
"Diameter_eq": [
1
],
"illuminationType": [
"text"
],
"Internal_structure": [
"text"
],
"license_short_name": [
"text"
],
"Lobular_Pattern": [
"text"
],
"Malignancy": [
"text"
],
"Manufacturer": [
"text"
],
"ManufacturerModelName": [
"text"
],
"Margin": [
"text"
],
"max_TotalPixelMatrixColumns_btw": [
1
],
"max_TotalPixelMatrixColumns_ebtw": [
1
],
"max_TotalPixelMatrixColumns_btwe": [
1
],
"max_TotalPixelMatrixColumns_ebtwe": [
1
],
"max_TotalPixelMatrixColumns_gte": [
1
],
"max_TotalPixelMatrixColumns_lte": [
1
],
"max_TotalPixelMatrixColumns_gt": [
1
],
"max_TotalPixelMatrixColumns_lt": [
1
],
"max_TotalPixelMatrixColumns_eq": [
1
],
"max_TotalPixelMatrixRows_btw": [
1
],
"max_TotalPixelMatrixRows_ebtw": [
1
],
"max_TotalPixelMatrixRows_btwe": [
1
],
"max_TotalPixelMatrixRows_ebtwe": [
1
],
"max_TotalPixelMatrixRows_gte": [
1
],
"max_TotalPixelMatrixRows_lte": [
1
],
"max_TotalPixelMatrixRows_gt": [
1
],
"max_TotalPixelMatrixRows_lt": [
1
],
"max_TotalPixelMatrixRows_eq": [
1
],
"min_PixelSpacing_btw": [
1
],
"min_PixelSpacing_ebtw": [
1
],
"min_PixelSpacing_btwe": [
1
],
"min_PixelSpacing_ebtwe": [
1
],
"min_PixelSpacing_gte": [
1
],
"min_PixelSpacing_lte": [
1
],
"min_PixelSpacing_gt": [
1
],
"min_PixelSpacing_lt": [
1
],
"min_PixelSpacing_eq": [
1
],
"Modality": [
"text"
],
"ObjectiveLensPower": [
1
],
"PatientID": [
"text"
],
"primaryAnatomicStructure": [
"text"
],
"SamplesPerPixel": [
"text"
],
"SegmentAlgorithmName": [
"text"
],
"SegmentAlgorithmType": [
"text"
],
"SegmentedPropertyCategoryCodeSequence": [
"text"
],
"SegmentedPropertyTypeCodeSequence": [
"text"
],
"SeriesDescription": [
"text"
],
"SeriesInstanceUID": [
"text"
],
"SeriesNumber": [
"text"
],
"SliceThickness_btw": [
1
],
"SliceThickness_ebtw": [
1
],
"SliceThickness_btwe": [
1
],
"SliceThickness_ebtwe": [
1
],
"SliceThickness_gte": [
1
],
"SliceThickness_lte": [
1
],
"SliceThickness_gt": [
1
],
"SliceThickness_lt": [
1
],
"SliceThickness_eq": [
1
],
"SOPClassUID": [
"text"
],
"SOPInstanceUID": [
"text"
],
"Sphericity": [
"text"
],
"Sphericity_quant_btw": [
1
],
"Sphericity_quant_ebtw": [
1
],
"Sphericity_quant_btwe": [
1
],
"Sphericity_quant_ebtwe": [
1
],
"Sphericity_quant_gte": [
1
],
"Sphericity_quant_lte": [
1
],
"Sphericity_quant_gt": [
1
],
"Sphericity_quant_lt": [
1
],
"Sphericity_quant_eq": [
1
],
"Spiculation": [
"text"
],
"StudyDate": [
"text"
],
"StudyDescription": [
"text"
],
"StudyInstanceUID": [
"text"
],
"Subtlety_score": [
"text"
],
"Surface_area_of_mesh_btw": [
1
],
"Surface_area_of_mesh_ebtw": [
1
],
"Surface_area_of_mesh_btwe": [
1
],
"Surface_area_of_mesh_ebtwe": [
1
],
"Surface_area_of_mesh_gte": [
1
],
"Surface_area_of_mesh_lte": [
1
],
"Surface_area_of_mesh_gt": [
1
],
"Surface_area_of_mesh_lt": [
1
],
"Surface_area_of_mesh_eq": [
1
],
"tcia_species": [
"text"
],
"tcia_tumorLocation": [
"text"
],
"Texture": [
"text"
],
"Volume_btw": [
1
],
"Volume_ebtw": [
1
],
"Volume_btwe": [
1
],
"Volume_ebtwe": [
1
],
"Volume_gte": [
1
],
"Volume_lte": [
1
],
"Volume_gt": [
1
],
"Volume_lt": [
1
],
"Volume_eq": [
1
],
"Volume_of_Mesh_btw": [
1
],
"Volume_of_Mesh_ebtw": [
1
],
"Volume_of_Mesh_btwe": [
1
],
"Volume_of_Mesh_ebtwe": [
1
],
"Volume_of_Mesh_gte": [
1
],
"Volume_of_Mesh_lte": [
1
],
"Volume_of_Mesh_gt": [
1
],
"Volume_of_Mesh_lt": [
1
],
"Volume_of_Mesh_eq": [
1
]
}
},
"sql": "text"
},
"manifest": {
"manifest_data": [
{
"age_at_diagnosis": 1,
"analysis_results_id": "text",
"AnatomicRegionSequence": "text",
"Apparent_Diffusion_Coefficient": 1,
"aws_bucket": "text",
"aws_url": "text",
"bmi": 1,
"BodyPartExamined": "text",
"Calcification": "text",
"CancerType": "text",
"collection_id": "text",
"country": "text",
"crdc_instance_uuid": "text",
"crdc_series_uuid": "text",
"crdc_study_uuid": "text",
"Diameter": 1,
"disease_code": "text",
"ethnicity": "text",
"FrameOfReferenceUID": "text",
"gcs_bucket": "text",
"gcs_url": "text",
"gender": "text",
"histological_type": "text",
"illuminationType": "text",
"instance_size": 1,
"Internal_structure": "text",
"license_short_name": "text",
"Lobular_Pattern": "text",
"Malignancy": "text",
"Manufacturer": "text",
"ManufacturerModelName": "text",
"Margin": "text",
"max_TotalPixelMatrixColumns": 1,
"max_TotalPixelMatrixRows": 1,
"min_PixelSpacing": 1,
"Modality": "text",
"ObjectiveLensPower": 1,
"pathologic_stage": "text",
"PatientID": "text",
"primaryAnatomicStructure": "text",
"Program": "text",
"project_name": "text",
"project_short_name": "text",
"race": "text",
"sample_type": "text",
"SamplesPerPixel": 1,
"SegmentAlgorithmType": "text",
"SegmentedPropertyCategoryCodeSequence": "text",
"SegmentedPropertyTypeCodeSequence": "text",
"SegmentNumber": 1,
"SeriesDescription": "text",
"SeriesInstanceUID": "text",
"SeriesNumber": "text",
"SliceThickness": 1,
"SOPClassUID": "text",
"SOPInstanceUID": "text",
"source_DOI": "text",
"Sphericity": "text",
"Sphericity_quant": 1,
"Spiculation": "text",
"StudyDate": "text",
"StudyDescription": "text",
"StudyInstanceUID": "text",
"Subtlety_score": "text",
"Surface_area_of_mesh": 1,
"tcia_species": "text",
"tcia_tumorLocation": "text",
"Texture": "text",
"tumor_tissue_site": "text",
"vital_status": "text",
"Volume": 1,
"Volume_of_Mesh": 1,
"instance_count": 1,
"series_count": 1,
"study_count": 1,
"patient_count": 1,
"collection_count": 1,
"group_size": 1
}
],
"totalFound": 1,
"rowsReturned": 1
},
"next_page": "text",
"code": 1
}Cohort spec and anifest