IDC User Guide
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IDC User Guide
prod
Welcome!
Getting started
Core functions
Frequently asked questions
Support
Key pointers
Introduction
Features
Google Cloud Platform
DICOM
Getting started with GCP
Requesting GCP cloud credits
Data
Introduction
Data versioning
Organization of data
Downloading data
Data release notes
Data known issues
DICOM
Introduction to DICOM
Data model
Original objects
Derived objects
Coding schemes
DICOM-TIFF dual personality files
IDC DICOM white papers
Portal
Getting started
Exploring data and cohorts
Visualizing images
Proxy policy
Viewer release notes
Portal release notes
Portal known issues
API
Getting started
IDC Data Model Concepts
Accessing the API
Endpoint Details
Release notes
Cookbook
Colab notebooks
BigQuery
Data Studio
Compute engine
NCI Cloud Resources
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Welcome!
Starting May 24, 2022, we introduce “IDC Community Office Hours”! Please join us on Google Meet at https://meet.google.com/xyt-vody-tvb every Tuesday 16:30 – 17:30 (New York) and Wednesday 10:30-11:30 (New York). Everyone is welcome, you can ask any question related to IDC, and Andrey Fedorov will be there to answer them!
The purpose of the Office hours is to understand the needs and pain points of our users, provide support, and collect feedback to help us direct our future developments!
NCI Imaging Data Commons (IDC) is a cloud-based repository of publicly available cancer imaging data co-located with the analysis and exploration tools and resources. IDC is a node within the broader NCI Cancer Research Data Commons (CRDC) infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data.
IDC connects researchers with
  1. 1.
    Cancer image collections
  2. 2.
    Robust infrastructure that contains imaging data, subject and sample metadata, and experimental metadata from disparate sources
  3. 3.
    Resources for searching, identifying, and viewing images, and
  4. 4.
    Additional data types contained in other Cancer Research Data Commons nodes (e.g., Genomics Data Commons and Proteomic Data Commons).
The overview of IDC is available in this open access publication. If you use IDC, please acknowledge us by citing it!
Fedorov, A., Longabaugh, W. J. R., Pot, D., Clunie, D. A., Pieper, S., Aerts, H. J. W. L., Homeyer, A., Lewis, R., Akbarzadeh, A., Bontempi, D., Clifford, W., Herrmann, M. D., Höfener, H., Octaviano, I., Osborne, C., Paquette, S., Petts, J., Punzo, D., Reyes, M., Schacherer, D. P., Tian, M., White, G., Ziegler, E., Shmulevich, I., Pihl, T., Wagner, U., Farahani, K. & Kikinis, R. NCI Imaging Data Commons. Cancer Res. 81, 4188–4193 (2021). http://dx.doi.org/10.1158/0008-5472.CAN-21-0950​
You can also review the accompanying demonstration videos for a quick summary of some of the key features of the platform.
https://datacommons.cancer.gov/
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Getting started
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