IDC User Guide
  • Welcome!
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  • Core functions
  • Frequently asked questions
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  • Data
    • Introduction
    • Data model
    • Data versioning
    • Organization of data
      • Files and metadata
      • Resolving CRDC Globally Unique Identifiers (GUIDs)
      • Clinical data
      • Organization of data, v2 through V13 (deprecated)
        • Files and metadata
        • Resolving CRDC Globally Unique Identifiers (GUIDs)
        • Clinical data
      • Organization of data in v1 (deprecated)
    • Downloading data
      • Downloading data with s5cmd
      • Directly loading DICOM objects from Google Cloud or AWS in Python
    • Data release notes
    • Data known issues
  • Tutorials
    • Portal tutorial
    • Python notebook tutorials
    • Slide microscopy
      • Using QuPath for visualization
  • DICOM
    • Introduction to DICOM
    • DICOM data model
    • Original objects
    • Derived objects
      • DICOM Segmentations
      • DICOM Radiotherapy Structure Sets
      • DICOM Structured Reports
    • Coding schemes
    • DICOM-TIFF dual personality files
    • IDC DICOM white papers
  • Portal
    • Getting started
    • Exploring and subsetting data
      • Configuring your search
      • Exploring search results
      • Data selection and download
    • Visualizing images
    • Proxy policy
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  • API
    • Getting Started
    • IDC API Concepts
    • Manifests
    • Accessing the API
    • Endpoint Details
    • V1 API
      • Getting Started
      • IDC Data Model Concepts
      • Accessing the API
      • Endpoint Details
      • Release Notes
  • Cookbook
    • Colab notebooks
    • BigQuery
    • Looker dashboards
      • Dashboard for your cohort
      • More dashboard examples
    • ACCESS allocations
    • Compute engine
      • 3D Slicer desktop VM
      • Using a BQ Manifest to Load DICOM Files onto a VM
      • Using VS Code with GCP VMs
      • Security considerations
    • NCI Cloud Resources
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Acknowledgments

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Last updated 10 months ago

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  • Imaging Data Commons team has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l.

  • We gratefully acknowledge and the that support public hosting of IDC-curated content, and cover out-of-cloud egress fees!

  • Several of the members of the IDC team utilize compute resources supported via the Allocations program, which is in turn funded by the US National Science Foundation. You can see instructions on how to get your allocation at .

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