IDC User Guide
  • Welcome!
  • 🚀Getting started
  • Core functions
  • Frequently asked questions
  • Support
  • Key pointers
  • Publications
  • IDC team
  • Acknowledgments
  • Jobs
  • Tutorials
    • Portal tutorial
    • Python notebook tutorials
    • Slide microscopy
      • Using QuPath for visualization
  • Data
    • Introduction
    • Data model
    • Data versioning
    • Organization of data
      • Files and metadata
      • Resolving CRDC Globally Unique Identifiers (GUIDs)
      • Clinical data
      • Organization of data, v2 through V13 (deprecated)
        • Files and metadata
        • Resolving CRDC Globally Unique Identifiers (GUIDs)
        • Clinical data
      • Organization of data in v1 (deprecated)
    • Downloading data
      • Downloading data with s5cmd
    • Data release notes
    • Data known issues
  • DICOM
    • Introduction to DICOM
    • DICOM data model
    • Original objects
    • Derived objects
      • DICOM Segmentations
      • DICOM Radiotherapy Structure Sets
      • DICOM Structured Reports
    • Coding schemes
    • DICOM-TIFF dual personality files
    • IDC DICOM white papers
  • Portal
    • Getting started
    • Exploring and subsetting data
      • Configuring your search
      • Exploring search results
      • Data selection and download
    • Visualizing images
    • Proxy policy
    • Viewer release notes
    • Portal release notes
  • API
    • Getting Started
    • IDC API Concepts
    • Manifests
    • Accessing the API
    • Endpoint Details
    • V1 API
      • Getting Started
      • IDC Data Model Concepts
      • Accessing the API
      • Endpoint Details
      • Release Notes
  • Cookbook
    • Colab notebooks
    • BigQuery
    • Looker dashboards
      • Dashboard for your cohort
      • More dashboard examples
    • ACCESS allocations
    • Compute engine
      • 3D Slicer desktop VM
      • Using a BQ Manifest to Load DICOM Files onto a VM
      • Using VS Code with GCP VMs
      • Security considerations
    • NCI Cloud Resources
Powered by GitBook
On this page

Was this helpful?

Edit on GitHub
Export as PDF
  1. Data

Introduction

PreviousUsing QuPath for visualizationNextData model

Last updated 7 months ago

Was this helpful?

Check out the for a quick introduction into data organization and main features of our repository!

IDC data is replicated as . You can see the summary dashboard of the dataset .

Currently, IDC is hosting data from the following data repositories:

  • publicly available radiology collections and analysis results collections (in DICOM format) from The Cancer Imaging Archive (TCIA)

  • whole slide pathology images (in ) collected by

    • The Cancer Genome Atlas (TCGA)

  • fluorescence images (in ) collected by the

If you would like us to prioritize an existing public collection, which is not currently included in the IDC offering, please start the discussion on our !

Check out for information about the collections added in the individual IDC data releases.

In the following pages we discuss how to access datasets hosted by IDC and their organization.

IDC Getting started tutorial
a public dataset in the Google Marketplace
here
DICOM-TIFF format
Clinical Proteomic Tumor Analysis Consortium (CPTAC)
National Lung Screening Trial (NLST)
DICOM-TIFF format
Human Tumor Atlas Network (HTAN)
forum
Data release notes